Repository revision
5:531935403142

Repository 'openms_speclibsearcher'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_speclibsearcher

SpecLibSearcher tool metadata
Miscellaneous
Identifies peptide MS/MS spectra by spectral matching with a searchable spectral library.
SpecLibSearcher
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_speclibsearcher/SpecLibSearcher/2.5+galaxy0
2.5+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_speclibsearcher/SpecLibSearcher/2.6+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_speclibsearcher/SpecLibSearcher/2.5+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_speclibsearcher/SpecLibSearcher/2.3.0
SpecLibSearcher
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.5 package
openms-thirdparty 2.5 package
blast 2.9.0 package
openjdk 8.0.192 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: SpecLibSearcher_1.mzML
lib: SpecLibSearcher_1.MSP
compare_function: ZhangSimilarityScore
precursor|mass_tolerance: 3.0
precursor|mass_tolerance_unit: Da
precursor|min_charge: 1
precursor|max_charge: 5
precursor|isotopes: 0 1
fragment|mass_tolerance: 10.0
report|top_hits: 10
filter|remove_peaks_below_threshold: 2.01
filter|min_peaks: 5
filter|max_peaks: 150
filter|cut_peaks_below: 1000
modifications|fixed:
modifications|variable:
modifications|variable_max_per_peptide: 2
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
SpecLibSearcher_1.mzML
SpecLibSearcher_1.MSP
value