Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_speclibsearcher/SpecLibSearcher/2.8+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_speclibsearcher/SpecLibSearcher/2.6+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_speclibsearcher/SpecLibSearcher/2.5+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_speclibsearcher/SpecLibSearcher/2.3.0 |
SpecLibSearcher |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
openms | 2.6 | package |
openms-thirdparty | 2.6 | package |
blast | 2.9.0 | package |
ctdopts | 1.4 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
in: SpecLibSearcher_1.mzML lib: SpecLibSearcher_1.MSP compare_function: ZhangSimilarityScore precursor|mass_tolerance: 3.0 precursor|mass_tolerance_unit: Da precursor|min_charge: 1 precursor|max_charge: 5 precursor|isotopes: 0 1 fragment|mass_tolerance: 10.0 report|top_hits: 10 filter|remove_peaks_below_threshold: 2.01 filter|min_peaks: 5 filter|max_peaks: 150 filter|cut_peaks_below: 1000 modifications|fixed: modifications|variable: modifications|variable_max_per_peptide: 2 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value |
SpecLibSearcher_1.mzML SpecLibSearcher_1.MSP value |