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Repository revision

Revision: 1:8c24cc7431aa

Repository 'smart_domains'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/earlhaminst/smart_domains

SMART domains tool metadata

Miscellaneous

Name: SMART domains

Description: Search domains in protein sequences using SMART

Id: smart_domains

Guid: toolshed.g2.bx.psu.edu/repos/earlhaminst/smart_domains/smart_domains/0.1.0

Version: 0.1.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/earlhaminst/smart_domains/smart_domains/0.1.0 (this tool)

smart_domains

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

perl-bioperl

1.6.924

package

perl-json

2.90

package

Additional information about this tool

Command:

perl '$__tool_directory__/smart-domain.pl'
--inputFile='$inputFile'
$Pfam
$SignalP
$Repeats
$DISEMBL
$Schnipsel
$outputFormat

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

inputFile: seq.fa
Pfam: True
SignalP: False
Repeats: False
DISEMBL: False
Schnipsel: False
outputFormat: --outputFormat=txt

seq.fa

Test-2

inputFile: seq.fa
Pfam: True
SignalP: False
Repeats: False
DISEMBL: False
Schnipsel: False
outputFormat: --outputFormat=json

seq.fa