Galaxy |

Repository revision

Revision: 3:4bd5e5dbc6c5

Repository 'structure'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/structure

Structure tool metadata

Miscellaneous

Name: Structure

Description: using multi-locus genotype data to investigate population structure

Id: structure

Guid: toolshed.g2.bx.psu.edu/repos/iuc/structure/structure/2.3.4+galaxy1

Version: 2.3.4+galaxy1

Version command string: structure | grep -E -o 'Version.+'

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/structure/structure/2.3.4+galaxy1 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/structure/structure/2.3.4

structure

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

structure

2.3.4

package

Additional information about this tool

Command:

cp '$mainparams' '$out_mainparams' &&
        cp '$extraparams' '$out_extraparams' &&

        mkdir out log

        #for $run in range(1, int($nb_run) + 1):
            && structure -i '$infile' -o outfile -m '$out_mainparams' -e '$out_extraparams' > 'log/K_${main.MAXPOPS}_run_${run}_f.log'
            && mv 'outfile_f' 'out/K_${main.MAXPOPS}_run_${run}_f'
        #end for

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

testdata1