| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/transit_resampling/transit_resampling/3.0.2+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/transit_resampling/transit_resampling/3.0.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/transit_resampling/transit_resampling/3.0.1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/transit_resampling/transit_resampling/3.0.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/transit_resampling/transit_resampling/2.5.2+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/transit_resampling/transit_resampling/2.3.3+galaxy1 |
| transit_resampling |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| transit | 3.0.2 | package |
| Additional information about this tool |
#if str($mode.replicates) == 'Batch':
#set $input_files = $mode.inputs
#else:
#set $input_files = ','.join(['input_file_%d.wig' % idx for idx, _ in enumerate(str($mode.inputs).split(','))])
#for idx, filename in enumerate(str($mode.inputs).split(',')):
ln -s '$filename' input_file_${idx}.wig &&
#end for
#end if
ln -s '$annotation' annotation.dat &&
#set $control_files = ','.join(['control_file_%d.wig' % idx for idx, _ in enumerate(str($controls).split(','))])
#for idx, filename in enumerate(str($controls).split(',')):
ln -s '$filename' control_file_${idx}.wig &&
#end for
transit resampling $input_files $control_files annotation.dat transit_out.txt
-iN $nterm
-tC $cterm
-n $normalization
-r $handle_replicates
-s $samples $histogram $adaptive $exclude_zero $pseudo $loess
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
mode|inputs: ['transit-in1-rep1.wig', 'transit-in1-rep2.wig'] mode|replicates: Replicates annotation: transit-in1.prot controls: ['transit-co1-rep1.wig', 'transit-co1-rep2.wig', 'transit-co1-rep3.wig'] samples: 1000 |
name: value |
transit-in1-rep1.wig transit-in1-rep2.wig transit-in1.prot transit-co1-rep1.wig transit-co1-rep2.wig transit-co1-rep3.wig value |