Repository revision
1:2485637fe656

Repository 'exonerate'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/exonerate

Exonerate tool metadata
Miscellaneous
Exonerate
pairwise sequence comparison
exonerate
toolshed.g2.bx.psu.edu/repos/iuc/exonerate/exonerate/2.4.0
2.4.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/exonerate/exonerate/2.4.0+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/exonerate/exonerate/2.4.0 (this tool)
exonerate
Requirements (dependencies defined in the <requirements> tag set)
name version type
exonerate 2.4.0 package
Functional tests
name inputs outputs required files
Test-1 query: genome.fa
ref_seq|input_fasta: genome.fa
ref_seq|ref_seq_selector: personal
outformat: targetgff
attributes: name
genome.fa
name
Test-2 query: genome.fa
ref_seq|input_fasta: merlin
ref_seq|ref_seq_selector: database
outformat: targetgff
attributes: name
genome.fa
name
Test-3 query: genome.fa
ref_seq|input_fasta: genome.fa
ref_seq|ref_seq_selector: personal
outformat: querygff
attributes: name
genome.fa
name
Test-4 query: genome.fa
ref_seq|input_fasta: genome.fa
ref_seq|ref_seq_selector: personal
outformat: alignment
attributes: name
genome.fa
name
Test-5 query: transcriptome.fa
ref_seq|input_fasta: genome.fa
ref_seq|ref_seq_selector: personal
model: est2genome
outformat: targetgff
attributes: name
transcriptome.fa
genome.fa
name
Test-6 query: proteome.fa
ref_seq|input_fasta: genome.fa
ref_seq|ref_seq_selector: personal
model: protein2genome
outformat: targetgff
attributes: name
proteome.fa
genome.fa
name
Test-7 query: genome.fa
ref_seq|input_fasta: genome.fa
ref_seq|ref_seq_selector: personal
model: coding2coding
outformat: targetgff
attributes: name
genome.fa
name