| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/exonerate/exonerate/2.4.0+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/exonerate/exonerate/2.4.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/exonerate/exonerate/2.4.0 |
| exonerate |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| exonerate | 2.4.0 | package |
| python | 3.7 | package |
| bcbiogff | 0.6.6 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
query: genome.fa ref_seq|input_fasta: genome.fa ref_seq|ref_seq_selector: personal outformat: targetgff |
attributes: name attributes: name |
genome.fa name |
| Test-2 |
query: genome.fa ref_seq|input_fasta: merlin ref_seq|ref_seq_selector: database outformat: targetgff |
attributes: name attributes: name |
genome.fa name |
| Test-3 |
query: genome.fa ref_seq|input_fasta: genome.fa ref_seq|ref_seq_selector: personal outformat: querygff |
attributes: name attributes: name |
genome.fa name |
| Test-4 |
query: genome.fa ref_seq|input_fasta: genome.fa ref_seq|ref_seq_selector: personal outformat: alignment |
attributes: name |
genome.fa name |
| Test-5 |
query: transcriptome.fa ref_seq|input_fasta: genome.fa ref_seq|ref_seq_selector: personal model: est2genome outformat: targetgff |
attributes: name attributes: name |
transcriptome.fa genome.fa name |
| Test-6 |
query: proteome.fa ref_seq|input_fasta: genome.fa ref_seq|ref_seq_selector: personal model: protein2genome outformat: targetgff |
attributes: name attributes: name |
proteome.fa genome.fa name |
| Test-7 |
query: genome.fa ref_seq|input_fasta: genome.fa ref_seq|ref_seq_selector: personal model: coding2coding outformat: targetgff |
attributes: name attributes: name |
genome.fa name |
| Test-8 |
ref_seq|input_fasta: genome.fa outformat: targetgff minintron: 100 ref_seq|ref_seq_selector: personal query: transcriptome.fa model: est2genome maxintron: 200 |
attributes: name attributes: name |
transcriptome.fa genome.fa name |