Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/earlhaminst/ensembl_get_genetree/get_genetree/0.1.2 (this tool) |
toolshed.g2.bx.psu.edu/repos/earlhaminst/ensembl_get_genetree/get_genetree/0.1.1 |
get_genetree |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
requests | 2.12.4 | package |
six | 1.10.0 | package |
Additional information about this tool |
python '$__tool_directory__/get_genetree.py' --id_type $input_type -i '$input' --format ${output_format.output_format_selector} #if $output_format.output_format_selector == 'json' -s ${output_format.sequence.sequence_selector} #if $output_format.sequence.sequence_selector != 'none' -a ${output_format.sequence.aligned} -c ${output_format.sequence.cigar} #end if #elif $output_format.output_format_selector == 'phyloxml' -s ${output_format.sequence.sequence_selector} #if $output_format.sequence.sequence_selector != 'none' -a ${output_format.sequence.aligned} #end if #else --nh_format $output_format.nh_format #end if > '$output'
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_type: gene_id input: ENSGALP00010009242 output_format|sequence|aligned: False output_format|sequence|cigar: False output_format|sequence|sequence_selector: protein output_format|output_format_selector: json |
name: value |
value |
Test-2 |
input_type: gene_id input: ENSGALP00010009242 output_format|nh_format: simple output_format|output_format_selector: nh |
name: value |
value |
Test-3 |
input_type: gene_tree_id input: ENSGT00390000003602 output_format|sequence|aligned: False output_format|sequence|cigar: False output_format|sequence|sequence_selector: protein output_format|output_format_selector: json |
name: value |
value |
Test-4 |
input_type: gene_tree_id input: ENSGT00390000003602 output_format|sequence|aligned: False output_format|sequence|sequence_selector: protein output_format|output_format_selector: phyloxml |
name: value |
value |