| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_psp_gen/meme_psp_gen/5.4.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_psp_gen/meme_psp_gen/5.0.5.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_psp_gen/meme_psp_gen/4.12.0.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_psp_gen/meme_psp_gen/4.11.2.0 |
| meme_psp_gen |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| meme | 5.4.1 | package |
| Additional information about this tool |
#if not $non_commercial_use
>&2 echo "this tool is only available for non commercial use";
exit 1;
#end if
ln -s '${primary_sequence}' meme_psp_input_pos.fa &&
ln -s '${control_sequence}' meme_psp_input_neg.fa &&
psp-gen
-pos meme_psp_input_pos.fa
-neg meme_psp_input_neg.fa
-minw $adv.minw
-maxw $adv.maxw
$adv.alphabet
#if str($adv.triples_cond.triples) == 'yes':
-triples
$adv.triples_cond.fixedstart
#end if
$adv.equiv
$adv.revcomp
$adv.scalemin
$adv.scalemax
$adv.maxrange
$adv.raw
#if str($adv.report_scores_cond.report_scores) == 'yes':
-reportscores
$adv.report_scores_cond.verbose
2> '$output_tabular'
#end if
> '$output_psp'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
primary_sequence: meme_psp_protein_input.fasta control_sequence: meme_psp_protein_input.fasta adv|alphabet: -protein adv|report_scores_cond|verbose: True adv|report_scores_cond|report_scores: yes non_commercial_use: True |
name: value name: value |
meme_psp_protein_input.fasta value |