Repository revision
30:6669fd407dc9

Repository 'vapper'
hg clone https://toolshed.g2.bx.psu.edu/repos/johnheap/vapper

VAPPER tool metadata
Miscellaneous
VAPPER
is a Variant Antigen Profiler that accurately quantifies the variant antigen diversity or presence in a Trypanosoma congolense or T.vivax isolate
VAP
toolshed.g2.bx.psu.edu/repos/johnheap/vapper/VAP/1.1.0
1.1.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/johnheap/vapper/VAP/1.1.0 (this tool)
toolshed.g2.bx.psu.edu/repos/johnheap/vapper/VAP/1.0.0
toolshed.g2.bx.psu.edu/repos/johnheap/vapper/VAP/0.0.5
VAP
Requirements (dependencies defined in the <requirements> tag set)
name version type
velvet 1.2.10 package
HMMER 3.1b2 package
bowtie2 2.2.6 package
samtools 1.6 package
cufflinks 2.2.1 package
blast 2.7.1 package
EMBOSS 6.6.0.0 package
seaborn 0.8.0 package
Functional tests
name inputs outputs required files
Test-1 TrypType|GT|contigs|contig: Test.fa
TrypType|GT|contigs|preassem: Contig available
TrypType|GT|analysis: Genomic
P: False
TrypType|species: Trypanosoma congolense
xname: Test
attributes: name
Test.fa
name