Repository revision
7:0d6c2ff54c76

Repository 'hicexplorer_hicdetectloops'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops

hicDetectLoops tool metadata
Miscellaneous
hicDetectLoops
searches for enriched regions
hicexplorer_hicdetectloops
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.6+galaxy1
3.6+galaxy1
hicDetectLoops --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.7.2+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.6+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.6+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.4.3.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.3.1.0
hicexplorer_hicdetectloops
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.6 package
Functional tests
name inputs outputs required files
Test-1 matrix_h5_cooler: small_test_matrix.cool
peakWidth: 2
windowSize: 5
pValuePreselection: 0.55
pValue: 0.5
maxLoopDistance: 30000000
 name: value
 small_test_matrix.cool
value