Repository revision
5:f16ab52334dd

Repository 'hicexplorer_hicdetectloops'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops

hicDetectLoops tool metadata
Miscellaneous
searches for enriched regions
hicexplorer_hicdetectloops
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.4.3.0
3.4.3.0
hicDetectLoops --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.6+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.4.3.0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.3.1.0
hicexplorer_hicdetectloops
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.4.3 package
Functional tests
name inputs outputs required files
Test-1 matrix_h5_cooler: small_test_matrix.cool
peakWidth: 2
windowSize: 5
pValuePreselection: 0.55
pValue: 0.5
maxLoopDistance: 30000000
name: value
small_test_matrix.cool
value