| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_export/pyprophet_export/2.1.4.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_export/pyprophet_export/2.1.4.0 |
| pyprophet_export |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| pyprophet | 2.1.4 | package |
| bioconductor-swath2stats | 1.16.0 | package |
| r-dplyr | 0.8.4 | package |
| r-data.table | 1.12.8 | package |
| r-gridextra | 2.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
conditional_output|format: legacy_merged input: protein2.osw conditional_swath2stats|swath2stats: no_swath2stats conditional_output|max_global_peptide_qvalue: 0.2 |
attributes: name |
protein2.osw name |
| Test-2 |
conditional_output|format: score_plots input: protein2.osw conditional_swath2stats|swath2stats: no_swath2stats |
attributes: name |
protein2.osw name |
| Test-3 |
conditional_swath2stats|study_design: study_design.tabular conditional_swath2stats|conditional_fdr_replica|calc_fdr_replica: calc_fdr_replica_no conditional_swath2stats|conditional_max_pep|filter_max_pep: filter_max_pep_no conditional_output|format: legacy_merged input: protein2.osw conditional_swath2stats|conditional_min_pep|filter_min_pep: filter_min_pep_no |
protein2.osw study_design.tabular |