Repository revision
3:ece83e6b5328

Repository 'pyprophet_export'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_export

PyProphet export tool metadata
Miscellaneous
Export tabular files, optional swath2stats export
pyprophet_export
toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_export/pyprophet_export/2.1.4.0
2.1.4.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_export/pyprophet_export/2.1.4.1
toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_export/pyprophet_export/2.1.4.0 (this tool)
pyprophet_export
Requirements (dependencies defined in the <requirements> tag set)
name version type
pyprophet 2.1.4 package
bioconductor-swath2stats 1.16.0 package
r-dplyr 0.8.4 package
r-data.table 1.12.8 package
r-gridextra 2.3 package
Functional tests
name inputs outputs required files
Test-1 conditional_output|format: legacy_merged
input: protein2.osw
conditional_swath2stats|swath2stats: no_swath2stats
conditional_output|max_global_peptide_qvalue: 0.2
attributes: name
protein2.osw
name
Test-2 conditional_output|format: score_plots
input: protein2.osw
conditional_swath2stats|swath2stats: no_swath2stats
attributes: name
protein2.osw
name
Test-3 conditional_swath2stats|study_design: study_design.tabular
conditional_swath2stats|conditional_fdr_replica|calc_fdr_replica: calc_fdr_replica_no
conditional_swath2stats|conditional_max_pep|filter_max_pep: filter_max_pep_no
conditional_output|format: legacy_merged
input: protein2.osw
conditional_swath2stats|conditional_min_pep|filter_min_pep: filter_min_pep_no
protein2.osw
study_design.tabular