Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicquickqc/hicexplorer_hicquickqc/3.7.2+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicquickqc/hicexplorer_hicquickqc/3.6+galaxy1 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicquickqc/hicexplorer_hicquickqc/3.6+galaxy0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicquickqc/hicexplorer_hicquickqc/3.4.3.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicquickqc/hicexplorer_hicquickqc/3.4.2.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicquickqc/hicexplorer_hicquickqc/3.4.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicquickqc/hicexplorer_hicquickqc/3.3.1.0 |
hicexplorer_hicquickqc |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
hicexplorer | 3.7.2 | package |
Additional information about this tool |
mkdir ./QCfolder && mkdir $qc.files_path && hicQuickQC --samFiles #for $repeat in $samFiles: '${repeat.samFile}' #end for --restrictionCutFile '$restrictionCutFile' #if $restrictionSequence: --restrictionSequence '$restrictionSequence' #end if #if $danglingSequence: --danglingSequence '$danglingSequence' #end if --QCfolder ./QCfolder --lines $lines && mv ./QCfolder/* $qc.files_path/ && mv $qc.files_path/hicQC.html $qc && mv $qc.files_path/*.log raw_qc
Functional tests |
name | inputs | outputs | required files |
Test-1 |
samFiles_0|samFile: small_test_R1_unsorted.sam samFiles_1|samFile: small_test_R2_unsorted.sam restrictionCutFile: DpnII_10k.bed restrictionSequence: GATC danglingSequence: GATC lines: 1000 |
name: value |
small_test_R1_unsorted.sam small_test_R2_unsorted.sam DpnII_10k.bed value |