Repository revision
17:05996586c8b3

Repository 'chira_collapse'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse

ChiRA collapse tool metadata
Miscellaneous
deduplicate fastq reads
chira_collapse
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.4.31
1.4.31
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.4.31 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.4.3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.4.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.4.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.4.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.3.7+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.3.5+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.3.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.3.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.3.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.2.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.1.5+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.1.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.1.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.0.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.0.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.0.2+galaxy0
chira_collapse
Requirements (dependencies defined in the <requirements> tag set)
name version type
chira 1.4.3 package
Additional information about this tool
chira_collapse.py
        -i 
        #if $in.ext.endswith(".gz")
            <(gunzip -c '$in')
        #else
            '$in'
        #end if
        -u '$umi_len'
        -o '$out'
    
None
False
Functional tests
name inputs outputs required files
Test-1 in: reads.fastq.gz
name: value
reads.fastq.gz
value