| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_procrad/stacks2_procrad/2.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_procrad/stacks2_procrad/2.4+galaxy0 (this tool) |
| stacks2_procrad |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| stacks | 2.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_type|fqinputs: procrad/R1.fq options_enzyme|options_enzyme_selector: 1 input_type|input_type_select: single barcode: procrad/barcodes options_enzyme|enzyme: ecoRI input_type|barcode_encoding: --inline_null add_log: True |
attributes: name |
procrad/R1.fq procrad/barcodes name |
| Test-2 |
filter_cond|filter_select: yes options_enzyme|enzyme: ecoRI options_enzyme|options_enzyme_selector: 1 input_type|input_type_select: single outype: gzfastq capture: True filter_cond|sliding: 0.1 barcode: procrad/barcodes input_type|fqinputs: ['procrad/R1.fq.gzip', 'procrad/R2.fq.gzip'] filter_cond|discard: True filter_cond|filter_illumina: True input_type|barcode_encoding: --inline_null filter_cond|score: 11 filter_cond|remove: True |
procrad/R1.fq.gzip procrad/R2.fq.gzip procrad/barcodes |
|
| Test-3 |
filter_cond|filter_select: no options_enzyme|enzyme: ecoRI options_enzyme|options_enzyme_selector: 1 input_type|input_type_select: paired outype: gzfasta capture: True barcode: procrad/barcodes input_type|fqinputs: list:paired collection filter_cond|len_limit: 50 add_log: True |
attributes: name |
procrad/R1.fq procrad/R2.fq procrad/barcodes name |
| Test-4 |
options_advanced|adapter_mm: options_enzyme|enzyme2: ecoRI options_enzyme|enzyme: ecoRI barcode: procrad/barcodes options_enzyme|options_enzyme_selector: 2 input_type|input_type_select: paired outype: fasta options_advanced|rescue_cond|barcode_dist_2: 2 options_advanced|retain_header: True options_advanced|rescue_cond|barcode_dist_1: 2 input_type|fqinputs: list:paired collection options_advanced|bestrad: True options_advanced|truncate: 70 options_advanced|rescue_cond|rescue: -r options_advanced|adapter_1: options_advanced|adapter_2: options_advanced|disable_rad_check: True |
procrad/R1.fq.gzip procrad/R2.fq.gzip procrad/barcodes |