Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/artbio/cpm_tpm_rpk/cpm_tpm_rpk/0.5.0 |
toolshed.g2.bx.psu.edu/repos/artbio/cpm_tpm_rpk/cpm_tpm_rpk/0.4.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/artbio/cpm_tpm_rpk/cpm_tpm_rpk/0.3.0 |
toolshed.g2.bx.psu.edu/repos/artbio/cpm_tpm_rpk/cpm_tpm_rpk/0.2.0 |
toolshed.g2.bx.psu.edu/repos/artbio/cpm_tpm_rpk/cpm_tpm_rpk/0.1.0 |
cpm_tpm_rpk |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
r-optparse | 1.3.2=r3.3.2_0 | package |
r-rtsne | 0.13=r3.3.2_0 | package |
r-ggplot2 | 2.2.1=r3.3.2_0 | package |
r-ggfortify | 0.4.1=r3.3.2_0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
visu_option|perp: 10 visu_option|seed: 49 visu_option|tsne_labels: yes log: FALSE visu_option|visualisation: yes option|type_transfo: none input: none.tab visu_option|theta: 1 |
attributes: name attributes: name attributes: name |
none.tab name |
Test-2 |
visu_option|perp: 2 visu_option|seed: 49 visu_option|tsne_labels: yes log: TRUE visu_option|visualisation: yes option|type_transfo: cpm input: counts.tab visu_option|theta: 1 |
attributes: name attributes: name attributes: name |
counts.tab name |
Test-3 |
visu_option|perp: 2 visu_option|seed: 49 visu_option|tsne_labels: no log: TRUE visu_option|visualisation: yes option|type_transfo: tpm input: counts.tab option|gene_file: gene_length.tab visu_option|theta: 1 |
attributes: name attributes: name attributes: name |
counts.tab gene_length.tab name |
Test-4 |
option|type_transfo: cpm input: counts.tab |
attributes: name |
counts.tab name |
Test-5 |
option|type_transfo: cpm input: counts.tab log: TRUE |
attributes: name |
counts.tab name |
Test-6 |
option|gene_header: TRUE input: counts.tab option|type_transfo: tpm option|gene_file: gene_length.tab |
attributes: name |
counts.tab gene_length.tab name |
Test-7 |
option|gene_header: TRUE input: counts.tab option|type_transfo: tpm option|gene_file: gene_length.tab log: TRUE |
attributes: name |
counts.tab gene_length.tab name |
Test-8 |
option|gene_header: TRUE input: counts.tab option|type_transfo: rpk option|gene_file: gene_length.tab |
attributes: name |
counts.tab gene_length.tab name |
Test-9 |
option|gene_header: TRUE input: counts.tab option|type_transfo: rpk option|gene_file: gene_length.tab log: TRUE |
attributes: name |
counts.tab gene_length.tab name |