Repository revision
7:ed1518ce2237

Repository 'data_manager_build_kraken2_database'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/data_manager_build_kraken2_database

Kraken2 tool metadata
Miscellaneous
Kraken2
database builder
kraken2_build_database
toolshed.g2.bx.psu.edu/repos/iuc/data_manager_build_kraken2_database/kraken2_build_database/2.1.2+galaxy0
2.1.2+galaxy0
kraken2 -version | head -n 1 | awk '{print $NF}'
False
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/data_manager_build_kraken2_database/kraken2_build_database/2.1.2+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/data_manager_build_kraken2_database/kraken2_build_database/2.1.2+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/data_manager_build_kraken2_database/kraken2_build_database/2.1.1
toolshed.g2.bx.psu.edu/repos/iuc/data_manager_build_kraken2_database/kraken2_build_database/2.0.8_beta+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/data_manager_build_kraken2_database/kraken2_build_database/2.0.8_beta+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/data_manager_build_kraken2_database/kraken2_build_database/2.0.8_beta
kraken2_build_database
Requirements (dependencies defined in the <requirements> tag set)
name version type
kraken2 2.1.2 package
python 3.7 package
Functional tests
name inputs outputs required files
Test-1 database_type|custom_fasta: adapter.fa
database_type|custom_database_name: custom_database
database_type|skip_maps: True
database_type|kmer_len: 35
database_type|minimizer_spaces: 6
database_type|load_factor: 0.7
database_type|clean: False
database_type|database_type: custom
name: value
adapter.fa
value
Test-2 database_type|prebuild|prebuilt_db: standard_08gb
database_type|prebuild|prebuilt_date: 2022-06-07
database_type|database_type: standard_prebuilt
name: value
value