| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/hyphy_cfel/hyphy_cfel/2.5.47+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/hyphy_cfel/hyphy_cfel/2.5.36+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/hyphy_cfel/hyphy_cfel/2.5.31+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/hyphy_cfel/hyphy_cfel/2.5.31+galaxy0 |
| hyphy_cfel |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| hyphy | 2.5.47 | package |
| Additional information about this tool |
#if $input_nhx is not None:
ln -s '$input_nhx' input.nhx &&
#end if
ln -s '$input_file' input.$input_file.extension &&
#set $input_file = 'input.%s' % $input_file.extension
hyphy contrast-fel
--code '$gencodeid'
#for $i, $branch in enumerate($branch_repeat):
--branch-set '$branch.branch_label'
#end for
--srv '$srv'
--permutations '$permutations'
--pvalue '$pvalue'
--qvalue '$qvalue'
--output '$cfel_output'
$input_file
#if $input_nhx:
--tree input.nhx
#end if
; EC=\$? ; [[ -f errors.* ]] && cat errors.* >&2 ; exit \$EC
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: absrel-in1.fa input_nhx: absrel-in1.nhx branch_repeat_0|branch_label: Internal branches branch_repeat_1|branch_label: Terminal branches |
name: value |
absrel-in1.fa absrel-in1.nhx value |