Revision: 1:b2fe55fd0651

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/shians/voom_rnaseq

Miscellaneous

Name: Voom Rnaseq

Description: Perform differential expression analysis using pipeline based on the voom function of the limma bioconductor package. This tool takes a count matrix (tab separated) as input and produces a HTML report as output.

Id: diffexp

Guid: toolshed.g2.bx.psu.edu/repos/shians/voom_rnaseq/diffexp/1.1.0

Version: 1.1.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/shians/voom_rnaseq/diffexp/1.1.0 (this tool)

diffexp

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
edgeR	3.5.27	R-module
limma	3.18.13	R-module

Functional tests

No functional tests defined