| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/ensembl_vep/ensembl_vep/109.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/ensembl_vep/ensembl_vep/108.0+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/ensembl_vep/ensembl_vep/106.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/ensembl_vep/ensembl_vep/106.1 |
| ensembl_vep |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| ensembl-vep | 108.0 | package |
| perl-math-cdf | 0.1 | package |
| grep | 3.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
annotation_cache|input1: input_test1.vcf annotation_cache|cache_file: drosophila_melanogaster_vep_106_BDGP6.32 annotation_cache|source: unrestricted |
name: value |
input_test1.vcf value |
| Test-2 |
annotation_cache|input1: input_test2.vcf annotation_cache|custom_annotation: test.gtf annotation_cache|source: custom ref_seq|ref: test.fa ref_seq|ref_source: history |
name: value |
input_test2.vcf test.gtf test.fa value |
| Test-3 |
annotation_cache|input1: input_test1.vcf annotation_cache|cache_file: drosophila_melanogaster_vep_106_BDGP6.32 annotation_cache|source: unrestricted out_opt|vcf_info_type|vcf_info_field: ANN |
name: value |
input_test1.vcf value |
| Test-4 |
annotation_cache|input1: input_test1.vcf annotation_cache|cache_file: drosophila_melanogaster_vep_106_BDGP6.32 annotation_cache|source: unrestricted out_opt|terms: display |
name: value |
input_test1.vcf value |
| Test-5 |
annotation_cache|input1: input_test1.vcf annotation_cache|cache_file: drosophila_melanogaster_vep_106_BDGP6.32 annotation_cache|source: unrestricted out_opt|out_opt_checkboxes: ['--overlaps', '--allele_number'] |
name: value |
input_test1.vcf value |
| Test-6 |
annotation_cache|input1: input_test1.vcf annotation_cache|cache_file: drosophila_melanogaster_vep_106_BDGP6.32 annotation_cache|source: unrestricted ident|ident_checkboxes: ['--uniprot', '--biotype'] |
name: value |
input_test1.vcf value |
| Test-7 |
annotation_cache|input1: input_test1.vcf annotation_cache|cache_file: drosophila_melanogaster_vep_106_BDGP6.32 annotation_cache|source: unrestricted colo_var|colo_var_checkboxes: ['--max_af', '--pubmed'] |
name: value |
input_test1.vcf value |