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Trim.seqs tool metadata

Miscellaneous

Name: Trim.seqs

Description: Trim sequences - primers, barcodes, quality

Id: mothur_trim_seqs

Guid: toolshed.g2.bx.psu.edu/repos/iuc/mothur_trim_seqs/mothur_trim_seqs/1.39.5.0

Version: 1.39.5.0

Version command string: mothur "#help()" | sed '7q;d' | cut -d" " -f2

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/mothur_trim_seqs/mothur_trim_seqs/1.39.5.0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/mothur_trim_seqs/mothur_trim_seqs/1.36.1.0

mothur_trim_seqs

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

mothur

1.39.5

package

Functional tests

name

inputs

outputs

required files

Test-1

fasta: amazon.fasta
names: amazon1.names
maxhomop: 4
savelog: True

name: value
name: value
name: value
name: value
name: value

amazon.fasta
amazon1.names
value

Test-2

fasta: amazon.fasta
maxhomop: 4
count: amazon1.count_table
savelog: True

name: value
name: value
name: value
name: value
name: value

amazon.fasta
amazon1.count_table
value

Test-3

fasta: amazon.fasta
oligo|oligos: GQY1XT001.oligos
oligo|bdiffs: 100
oligo|pdiffs: 100
oligo|add: yes
savelog: True

name: value
name: value
name: value
name: value

amazon.fasta
GQY1XT001.oligos
value

Test-4

name: value
name: value
name: value

amazon.fasta
GQY1XT001.oligos
value

Test-5

fasta: Fasting_Example1.fasta
maxhomop: 4
qual|qfile: Fasting_Example1.qual
qual|add2: yes
savelog: True

name: value
name: value
name: value
name: value
name: value

Fasting_Example1.fasta
Fasting_Example1.qual
value