Repository revision
22:9c52362ae7bb

Repository 'maxquant'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant

MaxQuant (using mqpar.xml) tool metadata
Miscellaneous
maxquant_mqpar
toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant_mqpar/2.0.3.0+galaxy0
2.0.3.0+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant_mqpar/2.0.3.0+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant_mqpar/1.6.17.0+galaxy2
toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant_mqpar/1.6.17.0+galaxy1
toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant_mqpar/1.6.17.0+galaxy0
maxquant_mqpar
Requirements (dependencies defined in the <requirements> tag set)
name version type
maxquant 2.0.3.0 package
pyyaml 5.4.1 package
dotnet 3.1.418 package
r-ptxqc 1.0.16 package
tar 1.32 package
Functional tests
name inputs outputs required files
Test-1 input_opts|infiles: ['BSA_min_22', 'BSA_min_21.mzXML']
input_opts|ftype: .mzxml
fasta_files: bsa.fasta
identifier_parse_rule: >([^\s]*)
description_parse_rule: >(.*)
mqpar_input: mqpar/mqpar.xml
output: ['evidence', 'msms', 'mzTab', 'allPeptides', 'msmsScans', 'mzRange', 'parameters', 'peptides', 'proteinGroups', 'summary', 'modificationSpecificPeptides', 'mqpar', 'output_all']
name: value
name: value
name: value
name: value
name: value
name: value
name: value
name: value
name: value
name: value
name: value
BSA_min_22
BSA_min_21.mzXML
bsa.fasta
mqpar/mqpar.xml
value