Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_indicator/mothur_indicator/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_indicator/mothur_indicator/1.36.1.0 |
mothur_indicator |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$otu' otu.dat && #if $withdesign.tree: ln -s '$withdesign.tree' withdesign.tree.dat && #end if #if $withdesign.havedesign == "yes": ln -s '$withdesign.design' withdesign.design.dat && #end if echo 'indicator( #if $withdesign.tree: tree=withdesign.tree.dat, #end if #if $otu.is_of_type("mothur.relabund"): relabund=otu.dat, #elif $otu.is_of_type("mothur.shared"): shared=otu.dat, #end if #if $label: label=${ str($label).replace(",","-") }, #end if #if $withdesign.groups: groups=${ str($withdesign.groups).replace(",","-") }, #end if #if $withdesign.havedesign == "yes": design=withdesign.design.dat, #end if processors='\${GALAXY_SLOTS:-8}' )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
otu: amazon.an.shared label: 0.03 withdesign|design: toymothur.design2 withdesign|groups: ['tardis', 'dalek'] withdesign|havedesign: yes savelog: True |
name: value name: value |
amazon.an.shared toymothur.design2 value |
Test-2 |
otu: amazon.an.shared withdesign|design: toymothur.design2 withdesign|groups: tardis withdesign|havedesign: yes savelog: True |
name: value name: value |
amazon.an.shared toymothur.design2 value |
Test-3 |
otu: amazon.an.shared withdesign|tree: amazon.an.jclass.unique.tre withdesign|groups: ['forest', 'pasture'] withdesign|havedesign: no savelog: True |
name: value name: value name: value |
amazon.an.shared amazon.an.jclass.unique.tre value |
Test-4 |
otu: amazon.an.shared withdesign|tree: amazon.an.jclass.unique.tre withdesign|groups: forest withdesign|havedesign: no savelog: True |
name: value name: value name: value |
amazon.an.shared amazon.an.jclass.unique.tre value |