| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_bellerophon/mothur_chimera_bellerophon/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_bellerophon/mothur_chimera_bellerophon/1.36.1.0 |
| mothur_chimera_bellerophon |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$fasta' fasta.dat &&
echo 'chimera.bellerophon(
fasta=fasta.dat,
filter=$filter,
correction=$correction,
#if int($window) > 0:
window=$window,
#end if
#if $increment:
increment=$increment,
#end if
processors='\${GALAXY_SLOTS:-8}'
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
fasta: Mock_S280_L001_R1_001_small.trim.contigs.good.fasta window: -1 savelog: True |
name: value name: value name: value name: value |
Mock_S280_L001_R1_001_small.trim.contigs.good.fasta value |