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hicCorrelate tool metadata

Miscellaneous

Name: hicCorrelate

Description: compute pairwise correlations between multiple Hi-C contact matrices

Id: hicexplorer_hiccorrelate

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/3.3.1.0

Version: 3.3.1.0

Version command string: hicCorrelate --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/3.4.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/3.3.1.0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/2.1.4.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/2.1.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/2.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/2.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/1.8.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/1.8.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/1.7.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/1.7.1.0

hicexplorer_hiccorrelate

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.3.1

package

Functional tests

name

inputs

outputs

required files

Test-1

input_files_0|matrix: small_test_matrix.h5
colormap: jet
input_files_1|mlabel: second
input_files_1|matrix: small_test_matrix.h5
input_files_0|mlabel: first
log1p: True
method: spearman

attributes: name
attributes: name

small_test_matrix.h5
name

Test-2

attributes: name
attributes: name

small_test_matrix.h5
name