Repository revision
2:b376ef118807

Repository 'hicexplorer_hicmergedomains'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergedomains

hicMergeDomains tool metadata
Miscellaneous
Merges TAD domains
hicexplorer_hicmergedomains
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergedomains/hicexplorer_hicmergedomains/3.7.2+galaxy0
3.7.2+galaxy0
hicMergeDomains --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergedomains/hicexplorer_hicmergedomains/3.7.2+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergedomains/hicexplorer_hicmergedomains/3.6+galaxy1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergedomains/hicexplorer_hicmergedomains/3.6+galaxy0
hicexplorer_hicmergedomains
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.7.2 package
Functional tests
name inputs outputs required files
Test-1 domainFiles: ['hicMergeDomains/10kbtad_domains.bed', 'hicMergeDomains/50kbtad_domains.bed', 'hicMergeDomains/100kbtad_domains.bed']
proteinFile: hicMergeDomains/ctcf_sorted.bed
minimumNumberOfPeaks: 2
valueX: 5000
percent: 0.7
name: value
name: value
hicMergeDomains/10kbtad_domains.bed
hicMergeDomains/50kbtad_domains.bed
hicMergeDomains/100kbtad_domains.bed
hicMergeDomains/ctcf_sorted.bed
value