| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_deduplicate/0.22.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_deduplicate/0.16.3 |
| bismark_deduplicate |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bismark | 0.22.1 | package |
| samtools | 1.8 | package |
| bowtie2 | 2.3.5 | package |
| Additional information about this tool |
python '$__tool_directory__/bismark_deduplicate_wrapper.py'
--single_or_paired $sPaired
--input '$mapping_output'
--output_report '$output_report'
--output_bam '$output_bam'
#if $separate_logfile:
--log_report '$log_report'
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
sPaired: single mapping_output: mapped_reads.bam |
name: value name: value |
mapped_reads.bam value |