| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_methylation_extractor/0.22.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_methylation_extractor/0.22.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_methylation_extractor/0.20.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_methylation_extractor/0.7.12 |
| bismark_methylation_extractor |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bismark | 0.22.1 | package |
| samtools | 1.8 | package |
| bowtie2 | 2.3.5 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: mapped_reads.bam singlePaired|sPaired: single splitting_report: True mbias_report: True cytosine_report|refGenomeSource|own_file: mm10.tiny.fa.gz cytosine_report|refGenomeSource|genomeSource: history cytosine_report|cytosine_report_selector: True |
name: value name: value name: value |
mapped_reads.bam mm10.tiny.fa.gz value |