| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_pretty_report/0.22.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_pretty_report/0.16.3 |
| bismark_pretty_report |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bismark | 0.22.1 | package |
| samtools | 1.8 | package |
| bowtie2 | 2.3.5 | package |
| Additional information about this tool |
python '$__tool_directory__/bismark2report_wrapper.py'
--alignment_report '$alignment'
#if $additional_reports['dedup']:
--dedup_report '$additional_reports["dedup"]'
#end if
#if $additional_reports['splitting']:
--splitting_report '$additional_reports["splitting"]'
#end if
#if $additional_reports['mbias']:
--mbias_report '$additional_reports["mbias"]'
#end if
#if $additional_reports['nucleotide']:
--nucleotide_report '$additional_reports["nucleotide"]'
#end if
--output_html_report '$output_html_report'
#if $separate_logfile:
--log_report '$log_report'
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
alignment: mapping_report.txt additional_reports|dedup: dedup_report.txt additional_reports|splitting: output_splitting_report.txt additional_reports|mbias: output_mbias_report.txt |
name: value |
mapping_report.txt dedup_report.txt output_splitting_report.txt output_mbias_report.txt value |