Repository revision
28:73d43034c860

Repository 'scanpy_parameter_iterator'
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_parameter_iterator

Scanpy ParameterIterator tool metadata
Miscellaneous
produce an iteration over a defined parameter
scanpy_parameter_iterator
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_parameter_iterator/scanpy_parameter_iterator/0.0.1+galaxy9
0.0.1+galaxy9
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_parameter_iterator/scanpy_parameter_iterator/0.0.1+galaxy9 (this tool)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_parameter_iterator/scanpy_parameter_iterator/0.0.1+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_parameter_iterator/scanpy_parameter_iterator/0.0.1+galaxy3
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_parameter_iterator/scanpy_parameter_iterator/0.0.1+galaxy2
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_parameter_iterator/scanpy_parameter_iterator/0.0.1+galaxy1
scanpy_parameter_iterator
Requirements (dependencies defined in the <requirements> tag set)
name version type
bioconductor-rtracklayer 1.42.1 package
Additional information about this tool
mkdir outputs;
    #if str( $input_type.parameter_values ) == "list_comma_separated_values":
        for param in \$(echo '$input_type.input_values' | sed 's/,/ /g'); do
          echo \$param > outputs/'$parameter_name'_\$param\.txt;
         done
    #else if str( $input_type.parameter_values ) == "step_increase_values":
	     for param in \$(seq '$input_type.start_value' '$input_type.step' '$input_type.end_value'); do
	       echo \$param > outputs/'$parameter_name'_\$param\.txt;
	     done
    #end if   
	    
None
False
Functional tests
name inputs outputs required files
Test-1 parameter_name: perplexity
input_type|input_values: 1, 5, 10
input_type|parameter_values: list_comma_separated_values