Repository revision

Revision: 2:f64b3c1a80a6

Repository 'spocc_occ'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ecology/spocc_occ

Get species occurrences data tool metadata

Miscellaneous

Name: Get species occurrences data

Description: from GBIF, OBIS, ALA, iNAT and others

Id: spocc_occ

Guid: toolshed.g2.bx.psu.edu/repos/ecology/spocc_occ/spocc_occ/1.2.2

Version: 1.2.2

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/ecology/spocc_occ/spocc_occ/1.2.2 (this tool)

toolshed.g2.bx.psu.edu/repos/ecology/spocc_occ/spocc_occ/0.9.0

spocc_occ

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

r-spocc

1.2.2

package

Additional information about this tool

Command:

Rscript '$__tool_directory__/spocc_occ.R' 
            '$sname' 
            '$from' 
            $limit; 

        #if $from=='gbif':
            sed -z -i -e 's/\n  \"/ /g' -e 's/\n}/ /g' output.tab
        #end if

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

sname: Canis lupus
from: ['gbif', 'bison']
limit: 50

name: value

value