Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.47+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.36+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.36+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.31+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.31+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.30+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.29+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.26+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.25+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.24+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.23+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.21+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.17+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.15+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.14+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.12+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.11+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.9+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.8+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.7+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.5+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.4+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.3+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.2+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.2+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_relax/hyphy_relax/2.5.0+galaxy0 |
hyphy_relax |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
hyphy | 2.5.47 | package |
Additional information about this tool |
#if $input_nhx is not None: ln -s '$input_nhx' input.nhx && #end if ln -s '$input_file' input.$input_file.extension && #set $input_file = 'input.%s' % $input_file.extension export OMP_NUM_THREADS="\${GALAXY_SLOTS:-1}" && hyphy relax --alignment ./$input_file #if $input_nhx: --tree input.nhx #end if --models '$models' --code '$gencodeid' --test '$test' #if $reference: --reference '$reference' #end if #if $advanced.srv_options == 'specify': --grid-size $advanced.grid_size --starting-points $advanced.starting_points --syn-rates $advanced.syn_rates --rates $advanced.rates --srv $advanced.srv #if $advanced.save_alternative_model: --save-fit alternative_model.nhx #end if #end if --output '$relax_output' ; EC=\$? ; [[ -f errors.* ]] && cat errors.* >&2 ; exit \$EC
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_file: relax-in1.fa input_nhx: relax-in1.nhx test: TEST |
name: value |
relax-in1.fa relax-in1.nhx value |
Test-2 |
input_file: relax-in2.nex test: PR advanced|srv: False advanced|save_alternative_model: True advanced|srv_options: specify |
name: value |
relax-in2.nex value |