| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_csq/bcftools_csq/1.22+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_csq/bcftools_csq/1.15.1+galaxy4 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_csq/bcftools_csq/1.15.1+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_csq/bcftools_csq/1.15.1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_csq/bcftools_csq/1.15.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_csq/bcftools_csq/1.15.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_csq/bcftools_csq/1.10 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_csq/bcftools_csq/1.9+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_csq/bcftools_csq/1.9 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_csq/bcftools_csq/1.4.0.0 |
| bcftools_csq |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bcftools | 1.15.1 | package |
| htslib | 1.15.1 | package |
| samtools | 1.15.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: csq.vcf sec_required|reference_source|fasta_ref: csq.fa sec_required|reference_source|reference_source_selector: history sec_required|gff_annot: csq.gff3 output_type: v |
name: value |
csq.vcf csq.fa csq.gff3 value |
| Test-2 |
input_file: csq.vcf sec_required|reference_source|fasta_ref: csq sec_required|reference_source|reference_source_selector: cached sec_required|gff_annot: csq.gff3 output_type: v |
name: value |
csq.vcf csq.gff3 value |
| Test-3 |
input_file: csq.vcf sec_required|reference_source|fasta_ref: csq sec_required|reference_source|reference_source_selector: cached sec_required|gff_annot: csq.gff3 sec_csq_opts|trim_protein_seq: 10 output_type: v |
name: value |
csq.vcf csq.gff3 value |
| Test-4 |
input_file: csq.vcf sec_required|reference_source|fasta_ref: csq sec_required|reference_source|reference_source_selector: cached sec_required|gff_annot: csq.gff3 sec_restrict|regions_overlap: 1 output_type: v |
name: value |
csq.vcf csq.gff3 value |