| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_ramachandran_protein/mdanalysis_ramachandran_protein/1.0.0+galaxy0 (this tool) |
| mdanalysis_ramachandran_protein |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mdanalysis | 1.0.0 | package |
| seaborn | 0.10.0 | package |
| h5py | 2.10.0 | package |
| jinja2 | 2.11.1 | package |
| Additional information about this tool |
python '$__tool_directory__/ramachandran_auto_protein.py'
--itraj '$trajin'
--istr '$strin'
--itrajext '$trajin.ext'
--istrext '$strin.ext'
--isegid1 '$segid1'
#if $resid1 and $resid2:
--iresid1 '$resid1'
--iresid2 '$resid2'
#end if
#if $resname:
--iresname '$resname'
#end if
--itemplatepath '$__tool_directory__'
#if $groupby:
--igroupby '$groupby'
#end if
--o_plot1 '$o_plot1'
--o_plot2 '$o_plot2'
--o_data1 '$o_data1'
--o_html1 '$o_html1'
2>&1
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
trajin: test.dcd strin: test.pdb segid1: PRO groupby: name |
name: value name: value name: value name: value |
test.dcd test.pdb value |