Repository revision
0:834843ebe569

Repository 'frogs'
hg clone https://toolshed.g2.bx.psu.edu/repos/frogs/frogs

FROGSSTAT DESeq2 Preprocess tool metadata
Miscellaneous
import a Phyloseq object and prepare it for DESeq2 differential abundance analysis
FROGSSTAT_DESeq2_Preprocess
toolshed.g2.bx.psu.edu/repos/frogs/frogs/FROGSSTAT_DESeq2_Preprocess/3.2.2
3.2.2
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/frogs/frogs/FROGSSTAT_DESeq2_Preprocess/4.2.0+galaxy1
toolshed.g2.bx.psu.edu/repos/frogs/frogs/FROGSSTAT_DESeq2_Preprocess/3.2.2 (this tool)
FROGSSTAT_DESeq2_Preprocess
Requirements (dependencies defined in the <requirements> tag set)
name version type
frogs 3.2.2 package
r-base 3.6.3 package
r-essentials 3.6 package
bioconductor-phyloseq 1.30.0 package
bioconductor-deseq2 1.26.0 package
r-optparse 1.6.6 package
Functional tests
name inputs outputs required files
Test-1 data: references/16-phylo_import.Rdata
var1: EnvType
name: value
references/16-phylo_import.Rdata
value