| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/frogs/frogs/FROGS_preprocess/4.2.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/frogs/frogs/FROGS_preprocess/3.2.2 (this tool) |
| FROGS_preprocess |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| frogs | 3.2.2 | package |
| vsearch | 2.17.0 | package |
| flash | 1.2.11 | package |
| cutadapt | 2.10 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
sequencer_type|input_type|archive_file: input/test_dataset.tar.gz sequencer_type|input_type|archive_type|R1_size: 267 sequencer_type|input_type|archive_type|R2_size: 266 sequencer_type|input_type|archive_type|mm_rate: 0.15 sequencer_type|input_type|archive_type|merge_software_type|expected_amplicon_size: 420 sequencer_type|input_type|archive_type|merge_software_type|merge_software_selected: flash sequencer_type|input_type|archive_type|keep_unmerged: True sequencer_type|input_type|archive_type|archive_type_selected: paired sequencer_type|input_type|input_type_selected: archive sequencer_type|min_amplicon_size: 44 sequencer_type|max_amplicon_size: 490 sequencer_type|sequencing_protocol|five_prim_primer: GGCGVACGGGTGAGTAA sequencer_type|sequencing_protocol|three_prim_primer: GTGCCAGCNGCNGCGG sequencer_type|sequencing_protocol|sequencing_protocol_selected: standard sequencer_type|sequencer_selected: illumina |
name: value name: value name: value |
input/test_dataset.tar.gz value |
| Test-2 |
sequencer_type|input_type|archive_file: input/test_dataset.tar.gz sequencer_type|input_type|archive_type|R1_size: 267 sequencer_type|input_type|archive_type|R2_size: 266 sequencer_type|input_type|archive_type|mm_rate: 0.15 sequencer_type|input_type|archive_type|merge_software_type|merge_software_selected: vsearch sequencer_type|input_type|archive_type|keep_unmerged: True sequencer_type|input_type|archive_type|archive_type_selected: paired sequencer_type|input_type|input_type_selected: archive sequencer_type|min_amplicon_size: 44 sequencer_type|max_amplicon_size: 490 sequencer_type|sequencing_protocol|five_prim_primer: GGCGVACGGGTGAGTAA sequencer_type|sequencing_protocol|three_prim_primer: GTGCCAGCNGCNGCGG sequencer_type|sequencing_protocol|sequencing_protocol_selected: standard sequencer_type|sequencer_selected: illumina |
name: value name: value name: value |
input/test_dataset.tar.gz value |