Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/humann2_barplot/humann2_barplot/0.11.1.1 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/humann2_barplot/humann2_barplot/0.11.1.0 |
humann2_barplot |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
humann2 | 0.11.1 | package |
matplotlib | 2.0.2 | package |
numpy | 1.13.1 | package |
scipy | 0.19.1 | package |
Additional information about this tool |
humann2_barplot --input '$input' --focal-feature '$focal_feature' #if str($top_strata) != '' --top-strata '$top_strata' #end if --sort $sort --last-metadatum '$last_metadatum' --focal-metadatum '$focal_metadatum' #if str($colormap) != '' --colormap '$'colormap' #end if #if str($meta_colormap) != '' --meta-colormap '$meta_colormap' #end if $exclude_unclassified --scaling '$scaling' $as_genera $grid $remove_zeroes --width '$width' --dimensions '$height' '$width' #if str($ylims) != '' --ylims '$ylims' #end if #if $format == 'png' --output 'output.png' #elif $format == 'pdf' --output 'output.pdf' #elif $format == 'svg' --output 'output.svg' #end if
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input: hmp_pathabund.txt focal_feature: ANAGLYCOLYSIS-PWY sort: none focal_metadatum: STSite last_metadatum: STSite exclude_unclassified: False scaling: none as_genera: False grid: False remove_zeroes: False width: 4 height: 8 format: png |
name: value |
hmp_pathabund.txt value |
Test-2 |
input: hmp_pathabund.txt focal_feature: ANAGLYCOLYSIS-PWY sort: sum focal_metadatum: STSite last_metadatum: STSite exclude_unclassified: False scaling: none as_genera: False grid: False remove_zeroes: False width: 4 height: 8 format: pdf |
name: value |
hmp_pathabund.txt value |
Test-3 |
input: hmp_pathabund.txt focal_feature: ANAGLYCOLYSIS-PWY sort: metadata focal_metadatum: STSite last_metadatum: STSite exclude_unclassified: True scaling: none as_genera: True grid: True remove_zeroes: True width: 4 height: 8 format: svg |
name: value |
hmp_pathabund.txt value |
Test-4 |
input: hmp_pathabund.txt focal_feature: ANAGLYCOLYSIS-PWY top_strata: 12 sort: sum focal_metadatum: STSite last_metadatum: STSite exclude_unclassified: False scaling: normalize as_genera: False grid: False remove_zeroes: False width: 4 height: 8 format: png |
name: value |
hmp_pathabund.txt value |