Repository revision
8:e5aaa5bea06a

Repository 'scmap_select_features'
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_select_features

Scmap select features tool metadata
Miscellaneous
finds the most informative features (genes/transcripts) for projection.
scmap_select_features
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_select_features/scmap_select_features/1.6.3+galaxy0
1.6.3+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_select_features/scmap_select_features/1.6.3+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_select_features/scmap_select_features/1.6.2+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_select_features/scmap_select_features/1.6.1+galaxy1
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_select_features/scmap_select_features/1.6.0+galaxy1
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_select_features/scmap_select_features/1.6.0+galaxy0
scmap_select_features
Requirements (dependencies defined in the <requirements> tag set)
name version type
scmap-cli 0.0.11 package
Additional information about this tool
scmap-preprocess-sce.R --input-object "${input_single_cell_experiment}" --output-sce-object "${input_single_cell_experiment}.preprocessed" && scmap-select-features.R --input-object-file "${input_single_cell_experiment}.preprocessed" --n-features '$n_features' --output-object-file '$output_single_cell_experiment' --output-plot-file '$plot'
    
None
False
Functional tests
name inputs outputs required files
Test-1 input_single_cell_experiment: test_sce.rds
name: value
name: value
test_sce.rds
value