| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/vcfanno/vcfanno/0.3.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/vcfanno/vcfanno/0.3.2+galaxy0 (this tool) |
| vcfanno |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| vcfanno | 0.3.2 | package |
| tabix | not provided | package |
| samtools | not provided | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_vcf: query.vcf.gz annotations_0|type|annotation: exac.vcf.gz annotations_0|type|fields_0|name: AC_AFR annotations_0|type|fields_0|field: AC_AFR annotations_0|type|fields_0|op: first annotations_0|type|fields_1|name: AC_AMR annotations_0|type|fields_1|field: AC_AMR annotations_0|type|fields_1|op: first annotations_0|type|fields_2|name: AC_EAS annotations_0|type|fields_2|field: AC_EAS annotations_0|type|fields_2|op: first annotations_0|type|fields_3|name: ID annotations_0|type|fields_3|field: ID annotations_0|type|fields_3|op: first annotations_0|type|type_select: vcf.gz annotations_1|type|annotation: ex.bam annotations_1|type|fields_0|name: mapq annotations_1|type|fields_0|field: mapq annotations_1|type|fields_0|op: mean annotations_1|type|fields_1|name: coverage annotations_1|type|fields_1|field: coverage annotations_1|type|fields_1|op: sum annotations_1|type|fields_2|name: xdp2 annotations_1|type|fields_2|field: DP2 annotations_1|type|fields_2|op: self annotations_1|type|type_select: bam annotations_2|type|annotation: fitcons.bed annotations_2|type|fields_0|name: lua_start annotations_2|type|fields_0|columns: 4 annotations_2|type|fields_0|op: first annotations_2|type|fields_1|name: lua_end annotations_2|type|fields_1|columns: 4 annotations_2|type|fields_1|op: first annotations_2|type|fields_2|name: lua_len annotations_2|type|fields_2|columns: 4 annotations_2|type|fields_2|op: first annotations_2|type|fields_3|name: lua_mean annotations_2|type|fields_3|columns: 4 annotations_2|type|fields_3|op: first annotations_2|type|fields_4|name: lua_loc annotations_2|type|fields_4|columns: 4 annotations_2|type|fields_4|op: first annotations_2|type|type_select: bed |
name: value |
query.vcf.gz exac.vcf.gz ex.bam fitcons.bed value |