Repository revision
9:03af14e245fb

Repository 'mothur_get_groups'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_groups

Get.groups tool metadata
Miscellaneous
Get.groups
Select groups
mothur_get_groups
toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_groups/mothur_get_groups/1.39.5.0
1.39.5.0
mothur "#help()" | sed '7q;d' | cut -d" " -f2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_groups/mothur_get_groups/1.39.5.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_groups/mothur_get_groups/1.36.1.0
mothur_get_groups
Requirements (dependencies defined in the <requirements> tag set)
name version type
mothur 1.39.5 package
Functional tests
name inputs outputs required files
Test-1 group_in: amazon.groups
groupnames|groups: ['forest', 'pasture']
groupnames|source: groups
savelog: True
name: value
name: value
amazon.groups
value
Test-2 group_in: amazon.groups
groupnames|accnos: amazon.groupaccnos
groupnames|source: accnos
savelog: True
name: value
name: value
amazon.groups
amazon.groupaccnos
value
Test-3 group_in: amazon.groups
shared_in: amazon.an.shared
groupnames|accnos: amazon.groupaccnos
groupnames|source: accnos
fasta_in: amazon.fasta
name_in: amazon1.names
list_in: amazon.an.list
savelog: True
name: value
name: value
name: value
name: value
amazon.groups
amazon.an.shared
amazon.groupaccnos
amazon.fasta
amazon1.names
amazon.an.list
value
Test-4 group_in: amazon_withgroups.count_table
groupnames|accnos: amazon.groupaccnos
groupnames|source: accnos
phylip_in: amazon.dist
column_in: amazon.pair.dist
savelog: True
name: value
name: value
name: value
amazon_withgroups.count_table
amazon.groupaccnos
amazon.dist
amazon.pair.dist
value