Repository revision
3:908880455b2d

Repository 'autodock_vina_prepare_box'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_box

Calculate the box parameters for an AutoDock Vina tool metadata
Miscellaneous
job from a ligand input file (confounding box)
prepare_box
toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_box/prepare_box/0.1.1
0.1.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_box/prepare_box/2020.03.4+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_box/prepare_box/0.1.1 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_box/prepare_box/0.1.0
prepare_box
Requirements (dependencies defined in the <requirements> tag set)
name version type
rdkit 2019.03.1 package
numpy 1.16.2 package
Functional tests
name inputs outputs required files
Test-1 bufy: 2
bufx: 1
bufz: 3
ligand: NUDT5A-x0114_2.mol
attributes: name
NUDT5A-x0114_2.mol
name
Test-2 bufy: 2
bufx: 1
bufz: 3
ligand: NUDT5A-x0114_2.sdf
exh: 10
seed_value: 1
attributes: name
NUDT5A-x0114_2.sdf
name
Test-3 bufy: 2
bufx: 1
bufz: 3
ligand: NUDT5A-x0114_2.mol2
attributes: name
NUDT5A-x0114_2.mol2
name
Test-4 bufy: 2
bufx: 1
bufz: 3
ligand: NUDT5A-x0114_2.pdb
exh: 10
seed_value: 1
attributes: name
NUDT5A-x0114_2.pdb
name