| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_depth/samtools_depth/1.15.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_depth/samtools_depth/1.13 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_depth/samtools_depth/1.9 |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_depth/samtools_depth/1.8 |
| samtools_depth |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.13 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_bams: eboVir3.bam cond_region|input_bed: eboVir3.1.bed cond_region|select_region: bed |
name: value |
eboVir3.bam eboVir3.1.bed value |
| Test-2 |
input_bams: eboVir3.bam cond_region|region: eboVir3:500-1500 cond_region|select_region: text |
name: value |
eboVir3.bam value |
| Test-3 |
input_bams: ['eboVir3.bam', 'eboVir3.2.bam'] all: -a |
name: value |
eboVir3.bam eboVir3.2.bam value |
| Test-4 |
input_bams: ['eboVir3.bam', 'eboVir3.2.bam'] minlength: 10 maxdepth: 4 basequality: 11 mapquality: 12 |
name: value |
eboVir3.bam eboVir3.2.bam value |
| Test-5 |
input_bams: eboVir3.bam cond_region|input_bed: eboVir3.1.bed cond_region|select_region: bed output_options|header: True |
name: value |
eboVir3.bam eboVir3.1.bed value |
| Test-6 |
input_bams: eboVir3.bam additional_options|required_flags: ['2', '16', '64'] |
name: value |
eboVir3.bam value |
| Test-7 |
input_bams: eboVir3.bam additional_options|skipped_flags: ['2', '16', '64'] |
name: value |
eboVir3.bam value |