| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_depth/samtools_depth/1.13 |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_depth/samtools_depth/1.9 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_depth/samtools_depth/1.8 |
| samtools_depth |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
cond_region|select_region: bed input_bams: eboVir3.bam cond_region|input_bed: eboVir3.1.bed |
attributes: name |
eboVir3.bam eboVir3.1.bed name |
| Test-2 |
cond_region|select_region: text cond_region|region: eboVir3:500-1500 input_bams: eboVir3.bam |
attributes: name |
eboVir3.bam name |
| Test-3 |
all: -a input_bams: ['eboVir3.bam', 'eboVir3.2.bam'] |
attributes: name |
eboVir3.bam eboVir3.2.bam name |
| Test-4 |
minlength: 10 mapquality: 12 maxdepth: 4 input_bams: ['eboVir3.bam', 'eboVir3.2.bam'] basequality: 11 |
attributes: name |
eboVir3.bam eboVir3.2.bam name |