| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/pysradb_search/pysradb_search/1.4.2+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/pysradb_search/pysradb_search/1.4.2+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/pysradb_search/pysradb_search/1.4.2+galaxy0 |
| pysradb_search |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| pysradb | 1.4.2 | package |
| matplotlib | 3.6.2 | package |
| imagemagick | 7.1.0_52 | package |
| gawk | 5.1.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
database: sra query: cancer conditional_mode|source: transcriptomic conditional_mode|organism: Homo sapiens conditional_mode|selector: false output_options|max: 100 output_options|output_files: ['stats', 'graphs'] |
name: value name: value |
value |
| Test-2 |
database: sra conditional_mode|source: genomic single cell conditional_mode|organism: Homo sapiens conditional_mode|selector: false conditional_platform|instrument: NovaSeq 6000 conditional_platform|platform: illumina strategy: wga selection: pcr advanced|accession: SRX18108950 advanced|publication_date: 01-11-2022 |
name: value name: value |
value |
| Test-3 |
database: ena query: cancer conditional_mode|source: genomic conditional_mode|organism: Homo sapiens conditional_mode|selector: false strategy: wxs selection: random output_options|verbosity: 1 output_options|max: 50 |
name: value name: value |
value |
| Test-4 |
database: sra query: escherichia conditional_mode|source: metagenomic conditional_mode|selector: true advanced|mbases: 100 |
name: value name: value |
value |
| Test-5 |
database: sra query: cancer conditional_mode|source: transcriptomic conditional_mode|organism: Homo sapiens conditional_mode|selector: false conditional_platform|instrument: MinION conditional_platform|platform: oxford nanopore strategy: rna seq selection: cdna |
name: value name: value |
value |
| Test-6 |
database: sra query: stress conditional_mode|source: transcriptomic conditional_mode|organism: Arabidopsis thaliana conditional_mode|selector: false conditional_platform|instrument: NextSeq 500 conditional_platform|platform: illumina strategy: rna seq selection: random output_options|verbosity: 3 output_options|max: 20 |
name: value name: value |
value |