Repository revision
57:da885ca16cb2

Repository 'peptideshaker'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker

Peptide Shaker tool metadata
Miscellaneous
Perform protein identification using various search engines based on results from SearchGUI
peptide_shaker
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/2.0.15+galaxy0
2.0.15+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/2.0.18+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/2.0.15+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/2.0.9+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/2.0.5+galaxy3
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36.3
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36.2
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.32
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.31
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.26
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.20
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.17
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.4
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.3
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.0
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.15.1
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.14.6
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.13.6
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.11.0
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.10.0
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.1.1
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/0.40.0
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/0.38.0
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.19.5.0
toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/0.1.0
peptide_shaker
Requirements (dependencies defined in the <requirements> tag set)
name version type
peptide-shaker 2.0.15 package
unzip not provided package
Functional tests
name inputs outputs required files
Test-1 searchgui_input: searchgui_tiny_result_default_4engines.zip
exporting_options|zip_conditional|export_psdb: True
exporting_options|mzidentml_conditional|mzidentml_creation: False
name: value
searchgui_tiny_result_default_4engines.zip
value
Test-2 searchgui_input: searchgui_tiny_result_default_4engines_modifications.zip
exporting_options|zip_conditional|export_psdb: True
exporting_options|mzidentml_conditional|mzidentml_creation: False
name: value
searchgui_tiny_result_default_4engines_modifications.zip
value
Test-3 searchgui_input: searchgui_smallsearch_default_somesearchengines_modifications.zip
exporting_options|zip_conditional|export_psdb: False
exporting_options|zip_conditional|zip_output_boolean: False
exporting_options|mzidentml_conditional|mzidentml_creation: False
exporting_options|output_reports: ['0', '1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11']
name: value
name: value
name: value
name: value
name: value
name: value
name: value
name: value
name: value
name: value
name: value
name: value
searchgui_smallsearch_default_somesearchengines_modifications.zip
value
Test-4 searchgui_input: searchgui_smallsearch_default_somesearchengines_modifications.zip
exporting_options|zip_conditional|export_psdb: False
exporting_options|zip_conditional|zip_output_boolean: False
exporting_options|mzidentml_conditional|mzidentml_creation: False
exporting_options|followup_conditional|followup_export_spectra: 0
exporting_options|followup_conditional|followup_export_accession_numbers: 0
exporting_options|followup_conditional|followup_export_sequences: 0
exporting_options|followup_conditional|followup_export_proteoforms: on
exporting_options|followup_conditional|followup_export_progenesis_conditional|followup_export_progenesis_selector: 0
exporting_options|followup_conditional|followup_conditional_selector: yes
name: value
name: value
name: value
name: value
searchgui_smallsearch_default_somesearchengines_modifications.zip
value