| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/4.0.25+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/4.0.22+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/4.0.12+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/4.0.7+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.10.1 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/1.27.0 |
| search_gui |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| searchgui | 4.0.22 | package |
| zip | 3.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_parameters_file: Identification_Parameters_default.par input_fasta_file: fastacli_searchgui_tinydb1_concatenated_target_decoy.fasta peak_lists_files: searchgui_tinyspectra1.mgf search_engines_options|engines: ['X!Tandem', 'MSGF', 'MyriMatch', 'Comet'] |
name: value |
Identification_Parameters_default.par fastacli_searchgui_tinydb1_concatenated_target_decoy.fasta searchgui_tinyspectra1.mgf value |
| Test-2 |
input_parameters_file: Identification_Parameters_default.par input_fasta_file: fastacli_searchgui_tinydb1_concatenated_target_decoy.fasta peak_lists_files: searchgui_smallspectra.mgf search_engines_options|engines: MS_Amanda |
name: value |
Identification_Parameters_default.par fastacli_searchgui_tinydb1_concatenated_target_decoy.fasta searchgui_smallspectra.mgf value |
| Test-3 |
input_parameters_file: Identification_Parameters_specific.par input_fasta_file: fastacli_searchgui_tinydb1_concatenated_target_decoy.fasta peak_lists_files: searchgui_tinyspectra1.mgf search_engines_options|engines: ['X!Tandem', 'MSGF', 'MyriMatch', 'Comet'] |
name: value |
Identification_Parameters_specific.par fastacli_searchgui_tinydb1_concatenated_target_decoy.fasta searchgui_tinyspectra1.mgf value |
| Test-4 |
input_parameters_file: Identification_Parameters_specific.par input_fasta_file: fastacli_searchgui_tinydb1_concatenated_target_decoy.fasta peak_lists_files: searchgui_smallspectra.mgf search_engines_options|engines: MS_Amanda |
name: value |
Identification_Parameters_specific.par fastacli_searchgui_tinydb1_concatenated_target_decoy.fasta searchgui_smallspectra.mgf value |
| Test-5 |
input_parameters_file: Identification_Parameters_default_modifications.par input_fasta_file: fastacli_searchgui_tinydb1_concatenated_target_decoy.fasta peak_lists_files: searchgui_tinyspectra1.mgf search_engines_options|engines: ['X!Tandem', 'MSGF', 'MyriMatch', 'Comet'] |
name: value |
Identification_Parameters_default_modifications.par fastacli_searchgui_tinydb1_concatenated_target_decoy.fasta searchgui_tinyspectra1.mgf value |
| Test-6 |
input_parameters_file: Identification_Parameters_default_modifications.par input_fasta_file: fastacli_searchgui_tinydb1_concatenated_target_decoy.fasta peak_lists_files: searchgui_tinyspectra1.mgf search_engines_options|engines: MS_Amanda |
name: value |
Identification_Parameters_default_modifications.par fastacli_searchgui_tinydb1_concatenated_target_decoy.fasta searchgui_tinyspectra1.mgf value |