Repository revision

Revision: 6:6e1aa95afa75

Repository 'ucsc_twobittofa'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/ucsc_twobittofa

twoBitToFa tool metadata

Miscellaneous

Name: twoBitToFa

Description: Convert all or part of .2bit file to FASTA

Id: ucsc-twobittofa

Guid: toolshed.g2.bx.psu.edu/repos/iuc/ucsc_twobittofa/ucsc-twobittofa/482

Version: 482

Version command string: echo "482"

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/ucsc_twobittofa/ucsc-twobittofa/482 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/ucsc_twobittofa/ucsc-twobittofa/472

toolshed.g2.bx.psu.edu/repos/iuc/ucsc_twobittofa/ucsc-twobittofa/469

toolshed.g2.bx.psu.edu/repos/iuc/ucsc_twobittofa/ucsc-twobittofa/377

toolshed.g2.bx.psu.edu/repos/iuc/ucsc_twobittofa/ucsc-twobittofa/357

toolshed.g2.bx.psu.edu/repos/iuc/ucsc_twobittofa/ucsc-twobittofa/332

ucsc-twobittofa

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

ucsc-twobittofa

482

package

Additional information about this tool

Command:

twoBitToFa
'$twobit_input'
'$fasta_output'

#if $seq
    -seq='$seq'
#end if

#if str($start)
    -start=$start
#end if

#if str($end)
    -end=$end
#end if

#if $seqList
    -seqList='$seqList'
#end if

$noMask

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

twobit_input: input.2bit

name: value

input.2bit
value