Galaxy |

Repository revision

Revision: 2:f1ccc8a6eb05

Repository 'roary'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/roary

Roary tool metadata

Miscellaneous

Name: Roary

Description: the pangenome pipeline - Quickly generate a core gene alignment from gff3 files

Id: roary

Guid: toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/3.10.2

Version: 3.10.2

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/3.12.0+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/3.10.2 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/0.1.0

roary

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

roary

3.10.2

package

Functional tests

name

inputs

outputs

required files

Test-1

gff_input|gffs: ['ex1.gff', 'ex2.gff']
gff_input|gff_input_selector: individual

sumstats: summary_statistics.txt

ex1.gff
ex2.gff
out/summary_statistics.txt

Test-2

percent_ident: 50
gff_input|gffs: ['ex1.gff', 'ex2.gff']
gff_input|gff_input_selector: individual
core_diff: 50.0

sumstats: summary_statistics.txt

ex1.gff
ex2.gff
test2/summary_statistics.txt